PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G0319
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 243aa    MW: 27743.9 Da    PI: 5.0631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G0319genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G ++W+t+++  g+ R++k+c++rw +yl
      Gh_A09G0319 14 RGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding58.51.5e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E++++++++++lG++ W++Ia++++ gRt++++k++w++
      Gh_A09G0319  67 RGAFTESEEDQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.486961IPR017930Myb domain
SuperFamilySSF466896.36E-2911108IPR009057Homeodomain-like
SMARTSM007172.4E-61363IPR001005SANT/Myb domain
PfamPF002496.3E-121461IPR001005SANT/Myb domain
CDDcd001679.51E-51661No hitNo description
PROSITE profilePS5129427.72262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.5E-2765117IPR009057Homeodomain-like
SMARTSM007171.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.0E-1767110IPR001005SANT/Myb domain
CDDcd001673.15E-1269110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRTV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TESEEDQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG  120
LDPVTHKPIQ KAEENDGDSS NKSNGDDQQQ GIKLDDDEKV EGIELSLDET NDLFNSYQML  180
CESFDLDSWL NQDAANNTCS SSYSMEESSN KSSTGETNST IGEDSLKQWV DSVDSFLSWD  240
SFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483906.11e-161PREDICTED: myb-related protein 315-like
SwissprotP813942e-84MYB15_ANTMA; Myb-related protein 315
TrEMBLA0A0B0MUM01e-180A0A0B0MUM0_G
STRINGPOPTR_0001s36220.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-85myb domain protein 40